Variant report

Variant	rs3851173
Chromosome Location	chr11:84680391-84680392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10792790	0.80[CHD][hapmap]
rs10792795	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap]
rs10898333	0.80[CHD][hapmap]
rs10898338	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10898339	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10898341	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11234253	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap]
rs11234256	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11234262	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs11234263	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs1470843	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17741917	1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs1940130	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2374578	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs2444253	0.83[CHB][hapmap]
rs2508322	0.83[CHB][hapmap]
rs34813295	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs349057	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs349068	0.84[CHB][hapmap]
rs349069	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs349076	0.85[CEU][hapmap]
rs349078	0.96[CEU][hapmap]
rs349080	0.92[CEU][hapmap]
rs349082	1.00[CEU][hapmap]
rs349083	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs349084	0.96[CEU][hapmap];0.89[TSI][hapmap]
rs349085	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs349086	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs349089	0.92[CEU][hapmap]
rs3851172	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3851174	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3907015	0.92[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap]
rs3911270	1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3911271	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3911273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs3933734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs4121472	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4121473	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4943908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs550970	0.89[CHB][hapmap]
rs613972	0.96[CEU][hapmap]
rs616320	0.92[CEU][hapmap]
rs619848	0.96[CEU][hapmap]
rs630015	0.92[CEU][hapmap]
rs652852	0.83[CHD][hapmap]
rs6592218	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs6592219	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6592225	0.82[CHD][hapmap]
rs6592228	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592229	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs7105774	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap]
rs7111336	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs7112064	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7125600	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs7127826	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7131501	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs7482922	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7925898	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7929647	0.92[CEU][hapmap];0.95[CHB][hapmap]
rs7931733	0.89[CEU][hapmap]
rs7943194	0.82[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs7949547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84677600-84683000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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