Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10792795	0.85[CEU][hapmap]
rs10898341	0.89[CEU][hapmap]
rs11234262	0.87[CEU][hapmap]
rs11234263	0.89[CEU][hapmap]
rs11234302	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1532312	0.82[CHB][hapmap]
rs2374578	0.85[CEU][hapmap]
rs349057	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs349073	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs349078	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs349080	0.85[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs349082	0.88[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs349083	0.85[CEU][hapmap]
rs349084	0.88[CEU][hapmap];0.83[MKK][hapmap]
rs349086	0.81[CEU][hapmap]
rs349089	0.85[CEU][hapmap]
rs3851173	0.85[CEU][hapmap]
rs3851174	0.89[CEU][hapmap]
rs3907015	0.85[CEU][hapmap]
rs3911273	0.85[CEU][hapmap]
rs4943908	0.85[CEU][hapmap]
rs565044	0.81[CHB][hapmap]
rs613972	0.89[CEU][hapmap]
rs616320	0.85[CEU][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs619848	0.92[CEU][hapmap]
rs630015	0.85[CEU][hapmap]
rs634050	0.82[JPT][hapmap]
rs6592218	0.85[CEU][hapmap]
rs6592219	0.85[CEU][hapmap]
rs6592229	0.81[CEU][hapmap]
rs7105774	0.85[CEU][hapmap]
rs7111336	0.81[CEU][hapmap]
rs7112064	0.89[CEU][hapmap]
rs7125600	0.89[CEU][hapmap]
rs7131501	0.85[CEU][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs7929647	0.85[CEU][hapmap]
rs7931733	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84829600-84843600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:84830400-84838400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:84835800-84837600	Weak transcription	GM12878-XiMat	blood
4	chr11:84835800-84841400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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