Variant report

Variant	rs3907015
Chromosome Location	chr11:84725828-84725829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10792795	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs10792796	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898341	0.96[CEU][hapmap];0.93[YRI][hapmap]
rs11234262	0.95[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234263	0.88[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234269	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11605620	0.82[JPT][hapmap]
rs17741917	0.81[CHD][hapmap]
rs2374578	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs2444253	0.82[YRI][hapmap]
rs2508322	0.84[CHB][hapmap];0.96[YRI][hapmap]
rs34813295	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs349057	0.82[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes]
rs349060	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs349063	0.93[YRI][hapmap]
rs349064	0.83[JPT][hapmap]
rs349068	0.82[YRI][hapmap]
rs349069	0.89[LWK][hapmap];0.97[MKK][hapmap];0.93[YRI][hapmap]
rs349076	0.85[CEU][hapmap]
rs349078	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs349079	0.83[JPT][hapmap]
rs349080	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs349082	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs349083	0.92[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs349084	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap]
rs349085	0.82[CEU][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs349086	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs349089	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3844142	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3851173	0.92[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap]
rs3851174	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3862780	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3862781	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3911271	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3911273	0.92[CEU][hapmap]
rs3933734	0.85[YRI][hapmap]
rs4121472	0.82[YRI][hapmap]
rs4121473	0.92[YRI][hapmap]
rs4271408	0.85[LWK][hapmap];0.93[MKK][hapmap];0.86[YRI][hapmap]
rs4943908	0.92[CEU][hapmap]
rs506422	0.89[YRI][hapmap]
rs509179	0.83[JPT][hapmap]
rs550970	0.96[YRI][hapmap]
rs573767	0.83[CHD][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];0.93[YRI][hapmap]
rs573963	0.83[JPT][hapmap]
rs582399	0.80[ASN][1000 genomes]
rs612389	0.83[JPT][hapmap]
rs613972	0.96[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs616320	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs619848	0.96[CEU][hapmap];0.83[YRI][hapmap]
rs624493	0.83[JPT][hapmap]
rs630015	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs634050	0.89[LWK][hapmap];0.94[MKK][hapmap];0.93[YRI][hapmap]
rs635860	0.83[LWK][hapmap];0.82[MKK][hapmap];0.93[YRI][hapmap]
rs652852	0.89[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap]
rs653885	0.93[YRI][hapmap]
rs6592218	0.92[CEU][hapmap]
rs6592219	0.92[CEU][hapmap]
rs6592223	0.89[YRI][hapmap]
rs6592228	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6592229	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap]
rs664417	0.83[JPT][hapmap]
rs7105774	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap]
rs7111336	0.96[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap]
rs7112064	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7125600	0.96[CEU][hapmap];0.84[CHB][hapmap];0.92[YRI][hapmap]
rs7127826	0.86[YRI][hapmap]
rs7131501	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7131533	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7482922	0.88[CHB][hapmap];0.92[YRI][hapmap]
rs7925898	0.81[YRI][hapmap]
rs7929647	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap]
rs7931733	0.96[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933636	0.86[YRI][hapmap]
rs7949547	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv555629	chr11:84720020-84744926	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv975120	chr11:84724538-84729502	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84725600-84726200	Enhancers	Fetal Heart	heart
2	chr11:84725800-84726200	Enhancers	Cortex derived primary cultured neurospheres	brain

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