Variant report

Variant	rs349057
Chromosome Location	chr11:84825567-84825568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84601788..84603295-chr11:84825346..84828031,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10792795	0.82[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs10792796	0.81[AMR][1000 genomes]
rs10898341	0.82[YRI][hapmap]
rs11234262	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs11234263	0.91[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs11234269	0.84[AMR][1000 genomes]
rs11234302	0.87[ASN][1000 genomes]
rs1532312	0.82[CHB][hapmap];0.81[LWK][hapmap];0.93[YRI][hapmap]
rs2374578	0.81[CEU][hapmap]
rs349060	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs349076	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs349078	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs349080	0.82[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs349082	0.80[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs349083	0.81[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs349084	0.85[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs349085	0.86[MEX][hapmap];0.84[TSI][hapmap]
rs349088	0.91[LWK][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap]
rs349089	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3844142	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3851173	0.81[CEU][hapmap];0.82[TSI][hapmap]
rs3862780	0.83[AMR][1000 genomes]
rs3862781	0.81[AMR][1000 genomes]
rs3907015	0.82[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes]
rs3911273	0.81[CEU][hapmap]
rs4943908	0.81[CEU][hapmap]
rs550970	0.82[YRI][hapmap]
rs565044	0.81[CHB][hapmap]
rs613972	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs616320	0.82[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs630015	0.82[CEU][hapmap]
rs634050	0.82[JPT][hapmap]
rs6592218	0.81[CEU][hapmap]
rs6592219	0.81[CEU][hapmap]
rs6592229	0.85[CEU][hapmap]
rs7105774	0.82[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs7111336	0.85[CEU][hapmap]
rs7125600	0.81[YRI][hapmap]
rs7131501	0.82[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7131533	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7482922	0.81[YRI][hapmap]
rs7929647	0.81[CEU][hapmap]
rs7931733	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84823000-84828000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:84825000-84827200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:84825400-84827200	Enhancers	HMEC	breast

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