Variant report

Variant	rs349085
Chromosome Location	chr11:84812643-84812644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10792795	0.82[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs10898341	0.85[CEU][hapmap]
rs11234262	0.87[CEU][hapmap]
rs11234263	0.85[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs11234269	0.82[EUR][1000 genomes]
rs2374578	0.81[CEU][hapmap]
rs349057	0.86[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs349060	0.89[EUR][1000 genomes]
rs349078	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs349080	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs349082	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs349083	0.83[ASW][hapmap];0.89[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs349084	0.88[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs349086	0.85[CEU][hapmap]
rs349089	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3844142	0.84[EUR][1000 genomes]
rs3851173	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs3851174	0.85[CEU][hapmap]
rs3862780	0.82[EUR][1000 genomes]
rs3907015	0.82[CEU][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap]
rs3911273	0.81[CEU][hapmap]
rs4943908	0.81[CEU][hapmap]
rs613972	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs616320	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs619848	0.85[CEU][hapmap]
rs630015	0.82[CEU][hapmap]
rs6592218	0.81[CEU][hapmap]
rs6592219	0.81[CEU][hapmap]
rs6592229	0.85[CEU][hapmap]
rs7105774	0.82[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs7111336	0.85[CEU][hapmap]
rs7112064	0.85[CEU][hapmap]
rs7125600	0.85[CEU][hapmap]
rs7131501	0.82[CEU][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs7131533	0.84[EUR][1000 genomes]
rs7929647	0.89[CEU][hapmap]
rs7931733	0.85[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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