Variant report

Variant	rs2374578
Chromosome Location	chr11:84655092-84655093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10792790	0.92[CHD][hapmap]
rs10792795	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[TSI][hapmap]
rs10898333	0.92[CHD][hapmap]
rs10898338	0.89[CHB][hapmap]
rs10898339	0.89[CHB][hapmap]
rs10898341	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs11234253	0.89[CHB][hapmap]
rs11234256	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11234262	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs11234263	0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[TSI][hapmap]
rs17741917	0.89[CHB][hapmap]
rs2508322	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs349057	0.81[CEU][hapmap]
rs349068	0.82[CHB][hapmap]
rs349076	0.85[CEU][hapmap]
rs349078	0.96[CEU][hapmap]
rs349080	0.92[CEU][hapmap]
rs349082	1.00[CEU][hapmap]
rs349083	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs349084	0.96[CEU][hapmap];0.84[TSI][hapmap]
rs349085	0.81[CEU][hapmap]
rs349086	0.88[CEU][hapmap]
rs349089	0.92[CEU][hapmap]
rs3851172	0.89[CHB][hapmap]
rs3851173	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3851174	0.96[CEU][hapmap];0.94[CHB][hapmap]
rs3907015	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs3911270	0.89[CHB][hapmap]
rs3911273	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs3933734	0.89[CHB][hapmap]
rs4121472	0.89[CHB][hapmap]
rs4121473	0.89[CHB][hapmap]
rs4943908	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs550970	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs613972	0.96[CEU][hapmap]
rs616320	0.92[CEU][hapmap]
rs619848	0.96[CEU][hapmap]
rs630015	0.92[CEU][hapmap]
rs6592218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6592219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592229	0.89[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7105774	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[TSI][hapmap]
rs7108021	0.92[CHD][hapmap]
rs7111336	0.89[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7112064	0.96[CEU][hapmap];0.89[CHB][hapmap]
rs7125600	0.96[CEU][hapmap];0.84[CHB][hapmap]
rs7127826	0.89[CHB][hapmap]
rs7131501	0.92[CEU][hapmap];0.84[TSI][hapmap]
rs7482922	0.93[CHB][hapmap]
rs7925898	0.89[CHB][hapmap]
rs7929647	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs7931733	0.89[CEU][hapmap]
rs7943194	0.89[CHB][hapmap]
rs7949547	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2374578	BCL7A	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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