Variant report

Variant	rs349080
Chromosome Location	chr11:84810305-84810306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84809503..84811967-chr11:84814385..84818155,3	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10792795	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs10792796	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10898341	0.96[CEU][hapmap];0.81[YRI][hapmap]
rs11234262	0.96[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11234263	0.96[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11234269	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11234302	0.80[AMR][1000 genomes]
rs182990	0.83[ASN][1000 genomes]
rs2155039	0.80[JPT][hapmap]
rs2374578	0.92[CEU][hapmap]
rs2444253	0.89[CHB][hapmap]
rs2508322	0.84[YRI][hapmap]
rs34813295	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs349057	0.82[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs349060	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs349063	0.84[CHB][hapmap];0.87[YRI][hapmap]
rs349068	0.84[CHB][hapmap]
rs349069	0.94[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap]
rs349076	0.85[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes]
rs349078	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs349082	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs349083	0.92[CEU][hapmap];0.89[CHB][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs349084	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[YRI][hapmap]
rs349085	0.82[CEU][hapmap]
rs349086	0.89[CEU][hapmap];0.89[CHB][hapmap];0.93[YRI][hapmap]
rs349089	0.93[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3844142	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3851173	0.92[CEU][hapmap]
rs3851174	0.96[CEU][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3862780	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3862781	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3907015	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3911271	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3911273	0.93[CEU][hapmap]
rs4121473	0.80[YRI][hapmap]
rs4271408	0.89[CHB][hapmap];0.83[YRI][hapmap]
rs4943908	0.93[CEU][hapmap]
rs506422	0.83[YRI][hapmap]
rs509179	0.80[JPT][hapmap]
rs550970	0.86[YRI][hapmap]
rs573767	0.90[YRI][hapmap]
rs582399	0.96[ASN][1000 genomes]
rs608647	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs613972	0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs616320	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs619848	0.96[CEU][hapmap];0.89[CHB][hapmap];0.81[YRI][hapmap]
rs630015	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap]
rs634050	0.89[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.88[ASN][1000 genomes]
rs635860	0.90[YRI][hapmap]
rs652852	0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap]
rs653885	0.87[YRI][hapmap]
rs6592218	0.93[CEU][hapmap]
rs6592219	0.93[CEU][hapmap]
rs6592228	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592229	0.96[CEU][hapmap];0.87[YRI][hapmap]
rs664417	0.80[JPT][hapmap]
rs7105774	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs7111336	0.96[CEU][hapmap];0.84[YRI][hapmap]
rs7112064	0.96[CEU][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7125600	0.96[CEU][hapmap]
rs7131501	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7131533	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7482922	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs7929647	0.93[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap]
rs7931733	0.96[CEU][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7933636	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84809800-84810400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:84809800-84810400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:84810000-84810400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr11:84810000-84810400	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:84810000-84810400	Enhancers	Left Ventricle	heart
6	chr11:84810000-84812400	Enhancers	Fetal Heart	heart

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