Variant report

Variant	rs6592228
Chromosome Location	chr11:84682210-84682211
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10792796	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10898338	0.94[ASN][1000 genomes]
rs10898339	0.94[ASN][1000 genomes]
rs11234256	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234262	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11234263	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11234269	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1470843	0.95[ASN][1000 genomes]
rs17741917	0.93[ASN][1000 genomes]
rs1940130	0.95[ASN][1000 genomes]
rs34813295	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs349060	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs349078	0.80[EUR][1000 genomes]
rs349080	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs349082	0.82[EUR][1000 genomes]
rs349083	0.81[EUR][1000 genomes]
rs349089	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3844142	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3851172	0.95[ASN][1000 genomes]
rs3851173	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3851174	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862780	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3862781	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3907015	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3911270	0.96[ASN][1000 genomes]
rs3911271	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7112064	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7127826	0.93[ASN][1000 genomes]
rs7131501	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7131533	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7925898	0.86[ASN][1000 genomes]
rs7931733	0.82[EUR][1000 genomes]
rs7949547	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84677600-84683000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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