Variant report

Variant	rs349060
Chromosome Location	chr11:84791840-84791841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84789796..84792505-chr11:84797965..84799859,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10792796	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11234262	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11234263	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11234269	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2444253	0.83[AFR][1000 genomes]
rs34813295	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs349057	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs349062	0.89[AFR][1000 genomes]
rs349063	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs349068	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs349078	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs349080	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs349082	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs349083	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs349089	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3844142	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3851174	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3862780	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3862781	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3907015	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3911271	0.81[AMR][1000 genomes]
rs4944509	0.95[ASN][1000 genomes]
rs506422	0.80[ASN][1000 genomes]
rs582399	0.82[ASN][1000 genomes]
rs613972	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs616320	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs633703	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs634050	0.81[AFR][1000 genomes]
rs635860	0.81[AFR][1000 genomes]
rs652852	0.85[ASN][1000 genomes]
rs6592228	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7112064	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7131501	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7131533	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7931733	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84788400-84792600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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