Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10898341	0.82[YRI][hapmap]
rs2444253	0.86[YRI][hapmap]
rs349057	0.82[CHB][hapmap];0.81[LWK][hapmap];0.93[YRI][hapmap]
rs349063	0.82[YRI][hapmap]
rs349068	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs349069	0.82[YRI][hapmap]
rs349073	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs349076	0.82[CHB][hapmap]
rs349077	0.86[CHD][hapmap]
rs349088	0.83[YRI][hapmap]
rs483220	0.81[JPT][hapmap]
rs550970	0.82[YRI][hapmap]
rs565044	1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[ASN][1000 genomes]
rs573767	0.81[JPT][hapmap];0.80[LWK][hapmap];0.82[YRI][hapmap]
rs613972	0.85[JPT][hapmap]
rs630015	0.83[YRI][hapmap]
rs634050	0.82[YRI][hapmap]
rs635860	0.82[YRI][hapmap]
rs652852	0.82[YRI][hapmap]
rs653885	0.81[JPT][hapmap];0.82[YRI][hapmap]
rs7125600	0.81[YRI][hapmap]
rs7131501	0.80[YRI][hapmap]
rs7482922	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84829600-84843600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:84839000-84842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:84840400-84843400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:84841400-84841600	Enhancers	Pancreatic Islets	Pancreatic Islet

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