Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84801469..84803222-chr11:84813954..84816201,2	K562	blood:
2	chr11:84809503..84811967-chr11:84814385..84818155,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11234262	0.82[YRI][hapmap]
rs11234263	0.82[YRI][hapmap]
rs1532312	0.83[YRI][hapmap]
rs182990	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2155039	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2444253	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs349057	0.91[LWK][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap]
rs349068	0.80[CHD][hapmap];0.84[MEX][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs349078	0.83[YRI][hapmap]
rs349087	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs349089	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs573767	0.82[CHD][hapmap]
rs608647	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs616320	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs630015	0.87[JPT][hapmap]
rs634050	0.82[CHD][hapmap]
rs635860	0.92[CHD][hapmap]
rs6592223	0.81[CHB][hapmap];0.82[YRI][hapmap]
rs6592225	0.81[CHB][hapmap]
rs668816	0.84[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7108021	0.84[CHB][hapmap]
rs7131501	0.83[CHD][hapmap]
rs7482922	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs349088	MSLNL	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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