Variant report

Variant	rs573963
Chromosome Location	chr11:84752277-84752278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84750639..84752620-chr11:84754807..84756706,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10501585	0.82[CHB][hapmap]
rs10792795	0.83[JPT][hapmap]
rs11600088	0.87[CHB][hapmap]
rs11605620	0.93[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs11607636	0.86[CHB][hapmap];0.94[GIH][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs11607740	0.80[CHB][hapmap]
rs17207058	0.87[CHB][hapmap]
rs1783749	0.87[CHB][hapmap]
rs180954	0.87[CHB][hapmap];0.82[CHD][hapmap]
rs349059	0.93[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs349061	0.87[CHB][hapmap]
rs349064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs349067	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs349077	0.86[CEU][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs349079	0.86[CEU][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs349089	0.82[JPT][hapmap]
rs3907015	0.83[JPT][hapmap]
rs472375	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap]
rs472406	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs483220	0.87[CHB][hapmap];0.97[GIH][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap]
rs509179	0.86[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs573767	0.82[CHD][hapmap]
rs576449	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs582652	0.87[CHB][hapmap];0.88[GIH][hapmap]
rs596423	0.87[CHB][hapmap];0.86[GIH][hapmap]
rs597604	0.90[ASN][1000 genomes]
rs612389	0.82[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap]
rs616320	0.87[JPT][hapmap]
rs623403	0.91[ASN][1000 genomes]
rs624493	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs630015	0.82[JPT][hapmap]
rs651536	0.87[CHB][hapmap]
rs659414	0.93[CHB][hapmap]
rs660451	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs660860	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs664417	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs678796	0.86[CEU][hapmap];0.80[CHB][hapmap]
rs7931733	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84751600-84755600	Enhancers	Fetal Intestine Large	intestine

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