Variant report

Variant	rs17207058
Chromosome Location	chr11:84663872-84663873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84659697..84661496-chr11:84663828..84666456,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501585	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.90[EUR][1000 genomes]
rs11600088	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs11605620	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[YRI][hapmap]
rs11607636	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11607740	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1783749	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs180954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs349059	0.86[CEU][hapmap];0.93[CHB][hapmap];0.86[YRI][hapmap]
rs349061	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs349063	0.85[JPT][hapmap]
rs349064	0.86[CEU][hapmap];0.81[CHB][hapmap];0.87[YRI][hapmap]
rs349067	0.86[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap]
rs349079	0.81[YRI][hapmap]
rs472375	0.87[CHB][hapmap];0.87[YRI][hapmap]
rs472406	0.87[CHB][hapmap]
rs483220	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs494517	0.90[EUR][1000 genomes]
rs509179	0.81[CHB][hapmap]
rs570423	0.90[EUR][1000 genomes]
rs573963	0.87[CHB][hapmap]
rs576449	0.86[CEU][hapmap];0.81[CHB][hapmap];0.95[YRI][hapmap];0.90[EUR][1000 genomes]
rs582652	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs596423	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs597604	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs612389	0.87[CHB][hapmap]
rs624493	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[YRI][hapmap]
rs637930	0.90[EUR][1000 genomes]
rs651536	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6592218	0.80[JPT][hapmap]
rs6592219	0.80[JPT][hapmap]
rs659414	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap]
rs660860	0.93[CEU][hapmap];0.81[CHB][hapmap];0.91[YRI][hapmap]
rs664417	0.81[CHB][hapmap];0.83[YRI][hapmap]
rs678796	0.93[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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