Variant report

Variant	rs28651059
Chromosome Location	chr8:117703931-117703932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117703617..117706358-chr8:117706814..117709205,3	MCF-7	breast:
2	chr8:117676850..117678636-chr8:117702239..117704184,2	K562	blood:
3	chr8:117697505..117699043-chr8:117703582..117706384,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10109976	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10505288	0.87[AFR][1000 genomes]
rs1550856	0.90[ASN][1000 genomes]
rs16888671	0.94[AFR][1000 genomes]
rs16888693	0.93[AFR][1000 genomes]
rs16888695	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888699	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888728	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867840	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28649280	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668628	0.95[EUR][1000 genomes]
rs4289842	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56316062	0.88[AFR][1000 genomes]
rs58836328	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59036101	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66883336	0.88[AFR][1000 genomes]
rs67676723	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983626	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014328	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681699	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7388498	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7388507	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823271	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825662	0.92[AFR][1000 genomes]
rs7828067	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829098	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7832540	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837208	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838174	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9693860	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979866	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979867	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117654600-117715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:117668200-117707000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:117670200-117707000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:117671000-117717600	Weak transcription	HepG2	liver
5	chr8:117674800-117706800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:117678200-117705600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:117682800-117707400	Weak transcription	Right Atrium	heart
8	chr8:117685400-117707200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:117690000-117707000	Weak transcription	Primary B cells from cord blood	blood
10	chr8:117695600-117704400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:117695600-117707600	Weak transcription	Dnd41	blood
12	chr8:117697000-117704800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:117698000-117711200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:117698200-117707400	Weak transcription	Gastric	stomach
15	chr8:117698400-117713400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:117698800-117704200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:117699000-117704400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:117699000-117719000	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:117699400-117705800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:117699400-117705800	Weak transcription	Ovary	ovary
21	chr8:117699400-117707000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:117699400-117707200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:117699400-117707400	Weak transcription	Right Ventricle	heart
24	chr8:117699400-117707600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:117699400-117707600	Weak transcription	Psoas Muscle	Psoas
26	chr8:117699600-117705800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:117699600-117707200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:117699800-117707000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:117699800-117708000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr8:117700200-117708800	Weak transcription	HSMMtube	muscle
31	chr8:117700200-117715200	Weak transcription	Fetal Intestine Small	intestine
32	chr8:117700600-117705400	Weak transcription	HUVEC	blood vessel
33	chr8:117700600-117706800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr8:117700600-117707600	Weak transcription	Aorta	Aorta
35	chr8:117700600-117707600	Weak transcription	Hela-S3	cervix
36	chr8:117701000-117706400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:117701200-117705600	Weak transcription	K562	blood
38	chr8:117701200-117707200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:117701400-117716200	Weak transcription	Fetal Heart	heart
40	chr8:117702000-117704800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:117702000-117710200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:117702400-117704400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr8:117702400-117704400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:117702400-117704800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr8:117702400-117704800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr8:117702600-117704000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:117702600-117704000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:117702600-117704000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr8:117702600-117704200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr8:117702600-117704400	Enhancers	Muscle Satellite Cultured Cells	--

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