Variant report

Variant	rs59036101
Chromosome Location	chr8:117770204-117770205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117769605..117772487-chr8:117772969..117774566,2	MCF-7	breast:
2	chr8:117768143..117769702-chr8:117769715..117771805,2	MCF-7	breast:
3	chr8:117766057..117771164-chr8:117775647..117780363,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147679	Chromatin interaction
ENSG00000147677	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10109976	0.92[EUR][1000 genomes]
rs16888695	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16888699	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16888728	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1867840	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28649280	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28651059	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28668628	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4289842	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58836328	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67676723	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6983626	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7014328	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7014359	0.82[EUR][1000 genomes]
rs72681699	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7388498	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7388507	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7823271	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7828067	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7829098	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7832540	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7837208	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838174	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9693860	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs979866	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs979867	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117768200-117771600	Weak transcription	Spleen	Spleen
2	chr8:117768400-117771400	Weak transcription	Esophagus	oesophagus
3	chr8:117768400-117771800	Weak transcription	Stomach Mucosa	stomach
4	chr8:117768600-117771600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:117768800-117771400	Weak transcription	GM12878-XiMat	blood
6	chr8:117768800-117771600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:117768800-117771800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:117768800-117777600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:117768800-117778000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:117769200-117771800	Weak transcription	K562	blood
11	chr8:117769200-117777600	Weak transcription	Dnd41	blood
12	chr8:117769400-117774000	Weak transcription	HepG2	liver
13	chr8:117769400-117777800	Weak transcription	Hela-S3	cervix

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