Variant report

Variant	rs28651511
Chromosome Location	chr8:121367599-121367600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10094767	0.89[AFR][1000 genomes]
rs10095056	0.89[AFR][1000 genomes]
rs16893922	1.00[EUR][1000 genomes]
rs16893926	1.00[EUR][1000 genomes]
rs28686875	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:121346400-121377600	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:121358000-121372000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:121359800-121368400	Weak transcription	Fetal Stomach	stomach
6	chr8:121359800-121369400	Weak transcription	Aorta	Aorta
7	chr8:121359800-121372000	Weak transcription	Ovary	ovary
8	chr8:121360200-121368600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:121360200-121372200	Weak transcription	Placenta	Placenta
10	chr8:121360200-121376600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:121361400-121368400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:121361400-121372000	Weak transcription	Fetal Lung	lung
13	chr8:121365200-121380600	Weak transcription	Gastric	stomach
14	chr8:121367000-121367600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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