Variant report

Variant	rs10095056
Chromosome Location	chr8:121357066-121357067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:121356000-121357241	MCF10A-Er-Src	breast:	n/a	chr8:121356779-121356786 chr8:121356777-121356787 chr8:121356138-121356150 chr8:121356140-121356147 chr8:121356776-121356788 chr8:121356774-121356785 chr8:121356140-121356149 chr8:121356719-121356728 chr8:121356778-121356786 chr8:121356400-121356409

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121135175..121137414-chr8:121356303..121358717,45	MCF-7	breast:
2	chr8:121134772..121137578-chr8:121356736..121359144,3	MCF-7	breast:

Variant related genes	Relation type
COL14A1	TF binding region
ENSG00000187955	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10094767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095413	0.85[YRI][hapmap]
rs10106487	1.00[AMR][1000 genomes]
rs16893919	1.00[AMR][1000 genomes]
rs28650206	1.00[AMR][1000 genomes]
rs28651511	0.89[AFR][1000 genomes]
rs28686875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297615	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
2	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
3	chr8:121344200-121361400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:121346400-121377600	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:121347400-121358800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:121348200-121357600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:121348200-121359200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:121348600-121359600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:121348800-121359000	Weak transcription	Fetal Brain Male	brain
10	chr8:121349200-121357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:121351200-121357600	Weak transcription	Esophagus	oesophagus
12	chr8:121352800-121357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:121354000-121360000	Enhancers	HSMM	muscle
14	chr8:121354400-121361400	Strong transcription	Fetal Lung	lung
15	chr8:121354600-121357800	Enhancers	HSMMtube	muscle
16	chr8:121354800-121357200	Weak transcription	Ovary	ovary
17	chr8:121355000-121358800	Weak transcription	Aorta	Aorta
18	chr8:121355000-121358800	Weak transcription	Placenta	Placenta
19	chr8:121355200-121357800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:121355200-121357800	Enhancers	NH-A	brain
21	chr8:121355400-121359800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:121355800-121357600	Enhancers	Fetal Stomach	stomach
23	chr8:121356000-121357600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:121356000-121357600	Enhancers	NHEK	skin
25	chr8:121356200-121358000	Enhancers	HMEC	breast
26	chr8:121356200-121358000	Enhancers	HUVEC	blood vessel
27	chr8:121356200-121360200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:121356200-121360200	Enhancers	NHDF-Ad	bronchial
29	chr8:121356200-121360400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:121356400-121357800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:121356400-121358200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:121356600-121357800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:121356600-121357800	Enhancers	Fetal Muscle Leg	muscle
34	chr8:121356600-121360200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:121356800-121359000	Weak transcription	NHLF	lung

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