Variant report

Variant	rs16893919
Chromosome Location	chr8:121340334-121340335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10094767	1.00[AMR][1000 genomes]
rs10095056	1.00[AMR][1000 genomes]
rs10100328	0.87[AFR][1000 genomes]
rs10106487	1.00[AMR][1000 genomes]
rs28514626	0.82[AFR][1000 genomes]
rs28650206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28686875	1.00[AMR][1000 genomes]
rs9297615	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121323200-121344800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:121323800-121345800	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:121328600-121340800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
7	chr8:121337000-121341200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:121337000-121344200	Weak transcription	Fetal Lung	lung
9	chr8:121337000-121345800	Weak transcription	Fetal Stomach	stomach
10	chr8:121337000-121348000	Weak transcription	Ovary	ovary
11	chr8:121337200-121341000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:121337200-121341600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:121337400-121346800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:121337600-121340800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:121338600-121344200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:121339200-121341000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:121339200-121342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:121339400-121341600	Enhancers	NHDF-Ad	bronchial
19	chr8:121339600-121340800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:121339600-121342200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:121339800-121341400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:121339800-121346800	Weak transcription	Aorta	Aorta
23	chr8:121340000-121341000	Weak transcription	Osteobl	bone
24	chr8:121340200-121340600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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