Variant report

Variant	rs9297615
Chromosome Location	chr8:121346354-121346355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121345045..121347797-chr8:121350555..121352584,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10094767	1.00[AMR][1000 genomes]
rs10095056	1.00[AMR][1000 genomes]
rs10100328	0.98[AFR][1000 genomes]
rs10106487	1.00[AMR][1000 genomes]
rs12335140	1.00[MEX][hapmap]
rs16893919	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28514626	0.92[AFR][1000 genomes]
rs28650206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28686875	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv612112	chr8:121234298-121385167	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121284800-121347800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:121320400-121372600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:121333800-121383800	Weak transcription	Fetal Intestine Large	intestine
4	chr8:121337000-121348000	Weak transcription	Ovary	ovary
5	chr8:121337400-121346800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:121339800-121346800	Weak transcription	Aorta	Aorta
7	chr8:121341000-121347600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:121341800-121347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:121342200-121347000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:121342400-121347400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:121343800-121349200	Enhancers	NHDF-Ad	bronchial
12	chr8:121344200-121348000	Strong transcription	Fetal Lung	lung
13	chr8:121344200-121361400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:121344800-121346400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:121344800-121349200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:121345000-121347600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:121345200-121348000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:121345200-121348200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:121345400-121349000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:121345600-121346400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:121345600-121348000	Enhancers	Osteobl	bone
22	chr8:121345800-121348600	Enhancers	Fetal Muscle Leg	muscle
23	chr8:121345800-121349200	Enhancers	Placenta	Placenta
24	chr8:121345800-121349200	Strong transcription	Fetal Stomach	stomach
25	chr8:121346000-121347000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:121346000-121347200	Weak transcription	NHLF	lung
27	chr8:121346000-121348600	Enhancers	Psoas Muscle	Psoas
28	chr8:121346000-121349200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr8:121346200-121346400	Enhancers	Colon Smooth Muscle	Colon
30	chr8:121346200-121347000	Weak transcription	Adipose Nuclei	Adipose

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