Variant report

Variant	rs28652947
Chromosome Location	chr4:173740200-173740201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11721456	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11735064	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12499757	0.85[EUR][1000 genomes]
rs12508259	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1459157	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1551666	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2332629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55747886	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58514649	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66925824	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6840834	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173715000-173740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173731400-173747400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:173737200-173742400	Weak transcription	Stomach Mucosa	stomach
4	chr4:173737400-173742000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:173737400-173742000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:173737400-173742200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:173740200-173740400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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