Variant report

Variant	rs6840834
Chromosome Location	chr4:173748040-173748041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11721456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11735064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12499757	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459157	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1551666	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2332629	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28652947	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696030	0.82[ASN][1000 genomes]
rs55747886	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173746800-173748800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:173747200-173748400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:173747200-173748400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:173747200-173748800	Enhancers	Hela-S3	cervix
5	chr4:173747400-173748200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:173747400-173748400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:173747400-173748600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:173747400-173748600	Enhancers	NH-A	brain
9	chr4:173747600-173748200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:173747600-173765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:173748000-173748200	Flanking Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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