Variant report

Variant	rs28652954
Chromosome Location	chr17:15527730-15527731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:15527706-15527827	A549	lung:	n/a	n/a
2	POLR2A	chr17:15527672-15527819	A549	lung:	n/a	n/a

Variant related genes	Relation type
CDRT1	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9895351	1.00[AMR][1000 genomes]
rs9907359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv1058286	chr17:15315763-15561130	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv543213	chr17:15315763-15561130	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1067123	chr17:15482503-15557728	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15515400-15536000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:15519600-15538400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr17:15522200-15531800	Weak transcription	Fetal Intestine Small	intestine
4	chr17:15522200-15532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:15522200-15532200	Weak transcription	Fetal Intestine Large	intestine
6	chr17:15522600-15533000	Weak transcription	HSMMtube	muscle
7	chr17:15523000-15531000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr17:15523000-15531400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr17:15523000-15531400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr17:15523000-15531600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr17:15523000-15532600	Weak transcription	Brain Anterior Caudate	brain
12	chr17:15523000-15533400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr17:15523000-15533600	Weak transcription	Fetal Brain Female	brain
14	chr17:15523000-15544000	Weak transcription	Brain Angular Gyrus	brain
15	chr17:15523000-15544200	Weak transcription	NHDF-Ad	bronchial
16	chr17:15523000-15548600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:15523000-15548600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr17:15523000-15548600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr17:15523000-15548800	Weak transcription	Brain Hippocampus Middle	brain
20	chr17:15523000-15548800	Weak transcription	Brain Substantia Nigra	brain
21	chr17:15523000-15548800	Weak transcription	Fetal Lung	lung
22	chr17:15523000-15551800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr17:15523200-15533400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr17:15524200-15531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:15524200-15548600	Weak transcription	Esophagus	oesophagus
26	chr17:15524400-15535400	Weak transcription	Aorta	Aorta
27	chr17:15525400-15531600	Weak transcription	Fetal Stomach	stomach
28	chr17:15525400-15531800	Weak transcription	HMEC	breast
29	chr17:15525600-15533200	Weak transcription	HSMM	muscle
30	chr17:15525600-15533400	Weak transcription	Liver	Liver
31	chr17:15525800-15532000	Weak transcription	Fetal Muscle Leg	muscle
32	chr17:15525800-15534800	Weak transcription	NH-A	brain
33	chr17:15526400-15532000	Weak transcription	Left Ventricle	heart
34	chr17:15526800-15527800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:15527000-15531400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr17:15527000-15531800	Weak transcription	Osteobl	bone
37	chr17:15527000-15532000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr17:15527200-15532000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:15527200-15538600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr17:15527400-15528800	Weak transcription	A549	lung
41	chr17:15527600-15532000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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