Variant report

Variant	rs28657958
Chromosome Location	chr7:150543026-150543027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150542584..150544794-chr7:150560485..150563293,2	MCF-7	breast:
2	chr7:150517223..150519461-chr7:150541701..150544355,2	K562	blood:
3	chr7:150541762..150544255-chr7:150551164..150553467,2	K562	blood:
4	chr7:150540555..150543117-chr7:150543855..150545586,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17173637	1.00[EUR][1000 genomes]
rs55947915	0.89[EUR][1000 genomes]
rs56321085	0.99[EUR][1000 genomes]
rs73163600	0.86[EUR][1000 genomes]
rs73165503	1.00[EUR][1000 genomes]
rs73165507	1.00[EUR][1000 genomes]
rs73165513	0.90[EUR][1000 genomes]
rs73165514	0.90[EUR][1000 genomes]
rs73165515	0.90[EUR][1000 genomes]
rs73165523	1.00[EUR][1000 genomes]
rs73165526	0.99[EUR][1000 genomes]
rs73165531	1.00[EUR][1000 genomes]
rs73165540	1.00[EUR][1000 genomes]
rs73165545	1.00[EUR][1000 genomes]
rs7787577	1.00[EUR][1000 genomes]
rs7794403	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150539600-150553800	Weak transcription	Liver	Liver
2	chr7:150541800-150543400	Enhancers	Fetal Muscle Trunk	muscle
3	chr7:150541800-150544400	Enhancers	Fetal Muscle Leg	muscle
4	chr7:150542200-150543200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:150542200-150543200	Enhancers	Fetal Intestine Large	intestine
6	chr7:150542200-150543200	Enhancers	Fetal Lung	lung
7	chr7:150542200-150543400	Enhancers	Fetal Heart	heart
8	chr7:150542200-150543800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:150542200-150544000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:150542400-150543200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:150542400-150543200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr7:150542400-150543200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr7:150542400-150543400	Enhancers	Colon Smooth Muscle	Colon
14	chr7:150542400-150543600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr7:150542400-150543600	Enhancers	HSMMtube	muscle
16	chr7:150542600-150543200	Enhancers	Fetal Intestine Small	intestine
17	chr7:150542600-150543200	Enhancers	Right Ventricle	heart
18	chr7:150542600-150543400	Enhancers	Brain Hippocampus Middle	brain
19	chr7:150542600-150543400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:150542600-150543400	Bivalent Enhancer	Placenta	Placenta
21	chr7:150542600-150543400	Enhancers	Fetal Stomach	stomach
22	chr7:150542600-150543400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr7:150542800-150543200	Enhancers	Colonic Mucosa	Colon
24	chr7:150542800-150543200	Enhancers	Right Atrium	heart
25	chr7:150542800-150543400	Enhancers	Ovary	ovary
26	chr7:150542800-150543800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr7:150542800-150544400	Enhancers	Adipose Nuclei	Adipose
28	chr7:150543000-150544200	Weak transcription	Monocytes-CD14+_RO01746	blood

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