Variant report

Variant	rs7787577
Chromosome Location	chr7:150521026-150521027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr7:150520597-150521088	K562	blood:	n/a	n/a
2	KAP1	chr7:150520216-150521304	U2OS	brain:	n/a	n/a
3	CEBPB	chr7:150520948-150521147	K562	blood:	n/a	n/a
4	MAFK	chr7:150520677-150521073	K562	blood:	n/a	n/a
5	TEAD4	chr7:150520260-150521826	K562	blood:	n/a	n/a
6	KAP1	chr7:150520013-150521419	HEK293	kidney:	n/a	n/a
7	MYC	chr7:150520785-150521144	K562	blood:	n/a	n/a
8	NFYA	chr7:150521012-150521896	K562	blood:	n/a	n/a
9	EP300	chr7:150520666-150521141	K562	blood:	n/a	n/a
10	RCOR1	chr7:150521003-150521109	K562	blood:	n/a	n/a
11	JUND	chr7:150520369-150521057	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150518572..150521398-chr7:150921710..150924207,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16884656	1.00[CHB][hapmap]
rs17173637	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657958	1.00[EUR][1000 genomes]
rs55947915	0.89[EUR][1000 genomes]
rs56321085	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73163600	0.86[EUR][1000 genomes]
rs73165503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165513	0.90[EUR][1000 genomes]
rs73165514	0.90[EUR][1000 genomes]
rs73165515	0.90[EUR][1000 genomes]
rs73165523	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165526	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165531	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165540	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794403	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150503400-150528000	Weak transcription	Ovary	ovary
2	chr7:150512000-150522800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:150512400-150521600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:150518200-150522000	Weak transcription	Fetal Stomach	stomach
5	chr7:150518400-150523200	Weak transcription	Right Atrium	heart
6	chr7:150518600-150522400	Weak transcription	Fetal Intestine Small	intestine
7	chr7:150519800-150523400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:150519800-150525200	Enhancers	Fetal Heart	heart
9	chr7:150520200-150523600	Enhancers	Placenta	Placenta
10	chr7:150520600-150521400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:150520600-150521600	Enhancers	Fetal Muscle Leg	muscle
12	chr7:150520800-150521200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:150520800-150521800	Enhancers	K562	blood
14	chr7:150520800-150522000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:150520800-150522800	Enhancers	Liver	Liver
16	chr7:150521000-150521200	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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