Variant report

Variant	rs28662311
Chromosome Location	chr8:52251879-52251880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10090175	1.00[AFR][1000 genomes]
rs10095233	1.00[AFR][1000 genomes]
rs10096916	1.00[AFR][1000 genomes]
rs10104870	1.00[AFR][1000 genomes]
rs10110989	1.00[AFR][1000 genomes]
rs12334607	1.00[AFR][1000 genomes]
rs17177764	1.00[AFR][1000 genomes]
rs17262634	1.00[AFR][1000 genomes]
rs17263233	1.00[AFR][1000 genomes]
rs28402859	1.00[AFR][1000 genomes]
rs28406300	1.00[AFR][1000 genomes]
rs28483066	1.00[AFR][1000 genomes]
rs28523681	1.00[AFR][1000 genomes]
rs28528084	1.00[AFR][1000 genomes]
rs28580739	1.00[AFR][1000 genomes]
rs28647691	1.00[AFR][1000 genomes]
rs28689165	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52245000-52258600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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