Variant report

Variant	rs28689165
Chromosome Location	chr8:52284351-52284352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10090175	1.00[AFR][1000 genomes]
rs10095233	1.00[AFR][1000 genomes]
rs10096916	1.00[AFR][1000 genomes]
rs10104870	1.00[AFR][1000 genomes]
rs10110989	1.00[AFR][1000 genomes]
rs12334607	1.00[AFR][1000 genomes]
rs17177764	1.00[AFR][1000 genomes]
rs17262634	1.00[AFR][1000 genomes]
rs17263233	1.00[AFR][1000 genomes]
rs28402859	1.00[AFR][1000 genomes]
rs28406300	1.00[AFR][1000 genomes]
rs28483066	1.00[AFR][1000 genomes]
rs28523681	1.00[AFR][1000 genomes]
rs28580739	1.00[AFR][1000 genomes]
rs28647691	1.00[AFR][1000 genomes]
rs28662311	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52283000-52284400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:52283000-52289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:52283200-52284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:52283800-52287400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:52284200-52284400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr8:52284200-52284600	Strong transcription	Left Ventricle	heart
7	chr8:52284200-52284600	Strong transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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