Variant report

Variant	rs28663368
Chromosome Location	chr4:110376396-110376397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10003981	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10005225	1.00[EUR][1000 genomes]
rs10008457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10009463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10011971	1.00[EUR][1000 genomes]
rs10016533	0.85[AFR][1000 genomes]
rs10020652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10030694	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040433	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040466	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040498	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28412073	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28460762	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28541279	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28595287	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28597954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28680423	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28723468	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829974	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57705376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6533431	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6533432	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6812917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6837083	1.00[EUR][1000 genomes]
rs6838597	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840561	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6852062	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6854516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898791	1.00[EUR][1000 genomes]
rs7665738	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7667502	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681265	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7685647	1.00[EUR][1000 genomes]
rs7697001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997563	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
2	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
3	chr4:110358600-110378600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:110360400-110384200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:110363000-110384200	Weak transcription	Esophagus	oesophagus
6	chr4:110363600-110383600	Weak transcription	Pancreas	Pancrea
7	chr4:110363600-110383600	Weak transcription	NHDF-Ad	bronchial
8	chr4:110363600-110384200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:110363600-110384200	Weak transcription	Hela-S3	cervix
10	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:110364600-110384200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110365000-110383400	Weak transcription	Fetal Heart	heart
13	chr4:110365000-110384000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:110365200-110384200	Weak transcription	Aorta	Aorta
15	chr4:110366000-110391400	Weak transcription	Small Intestine	intestine
16	chr4:110367400-110383600	Weak transcription	HUVEC	blood vessel
17	chr4:110367600-110376800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:110367600-110383200	Weak transcription	Right Ventricle	heart
19	chr4:110367600-110383800	Weak transcription	NHLF	lung
20	chr4:110367600-110384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:110367600-110384200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:110367600-110384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:110367600-110384200	Weak transcription	Brain Germinal Matrix	brain
24	chr4:110367800-110377400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr4:110367800-110380800	Weak transcription	Brain Angular Gyrus	brain
26	chr4:110367800-110383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:110367800-110383800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:110367800-110384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:110367800-110384200	Weak transcription	Fetal Kidney	kidney
30	chr4:110367800-110384200	Weak transcription	Osteobl	bone
31	chr4:110368000-110383400	Weak transcription	HMEC	breast
32	chr4:110368000-110383600	Weak transcription	HepG2	liver
33	chr4:110368000-110384200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:110368600-110383600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr4:110368800-110377800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr4:110369000-110384200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr4:110369200-110384200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr4:110371200-110382200	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:110371400-110377400	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:110371400-110378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:110371400-110381400	Weak transcription	Brain Anterior Caudate	brain
42	chr4:110371400-110382800	Weak transcription	NH-A	brain
43	chr4:110371400-110383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:110371400-110383200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:110371400-110383200	Weak transcription	Spleen	Spleen
46	chr4:110371400-110384000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr4:110371400-110384000	Weak transcription	Fetal Brain Female	brain
48	chr4:110371400-110384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr4:110371400-110384200	Weak transcription	Lung	lung
50	chr4:110371400-110384200	Weak transcription	Stomach Smooth Muscle	stomach

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