Variant report

Variant	rs6533432
Chromosome Location	chr4:110459111-110459112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10003981	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10005225	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10008457	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10009463	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10011971	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10016533	0.86[YRI][hapmap]
rs10020652	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10030694	1.00[EUR][1000 genomes]
rs17040433	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17040466	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17040486	1.00[CEU][hapmap];0.97[YRI][hapmap]
rs17040498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17040565	1.00[CEU][hapmap]
rs28412073	1.00[EUR][1000 genomes]
rs28460762	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28541279	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs28595287	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28597954	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28663368	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28680423	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28723468	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28829974	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57705376	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6533431	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6812917	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834714	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6837083	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6838597	1.00[CEU][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6840561	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6852062	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6854516	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898791	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7665738	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7667502	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674196	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677736	1.00[CEU][hapmap];0.97[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681265	1.00[CEU][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7685647	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7697001	1.00[CEU][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997563	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv525385	chr4:110395146-110466413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110393800-110469200	Weak transcription	Stomach Mucosa	stomach
2	chr4:110409400-110467800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:110411400-110464600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr4:110412400-110465400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:110412400-110466200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:110412400-110470600	Strong transcription	Fetal Thymus	thymus
7	chr4:110420200-110466400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:110423400-110480800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:110424800-110468400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:110425000-110463800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:110425200-110468000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:110425400-110464800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr4:110427400-110464800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr4:110428200-110464600	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:110433400-110465800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:110434800-110469600	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr4:110435000-110462600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:110435000-110468400	Strong transcription	Liver	Liver
19	chr4:110436800-110468000	Strong transcription	HSMM	muscle
20	chr4:110437600-110462600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:110445200-110463000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:110445400-110461800	Strong transcription	NHDF-Ad	bronchial
23	chr4:110445800-110467800	Strong transcription	Adipose Nuclei	Adipose
24	chr4:110446000-110463000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:110446000-110464800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:110446000-110465800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:110446400-110464600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr4:110447200-110465400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:110448800-110479600	Weak transcription	Small Intestine	intestine
30	chr4:110448800-110480000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:110449000-110460200	Weak transcription	Psoas Muscle	Psoas
32	chr4:110449400-110464400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:110449600-110469400	Weak transcription	Pancreas	Pancrea
34	chr4:110449800-110459600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:110451400-110461000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:110451600-110461200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:110451800-110464400	Weak transcription	Gastric	stomach
38	chr4:110452000-110467000	Weak transcription	Spleen	Spleen
39	chr4:110452000-110470200	Weak transcription	Esophagus	oesophagus
40	chr4:110452400-110480800	Weak transcription	Right Ventricle	heart
41	chr4:110452600-110460800	Weak transcription	Fetal Brain Male	brain
42	chr4:110453400-110466000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr4:110454000-110480600	Weak transcription	NHLF	lung
44	chr4:110454600-110480200	Weak transcription	A549	lung
45	chr4:110455000-110470800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr4:110455200-110466600	Weak transcription	K562	blood
47	chr4:110455400-110462400	Weak transcription	Hela-S3	cervix
48	chr4:110455400-110469400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr4:110455400-110469800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:110455600-110461000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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