Variant report

Variant	rs28663378
Chromosome Location	chr19:41646136-41646137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73931450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391909	chr19:41632754-41688263	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41645800-41646200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr19:41645800-41646600	Enhancers	Stomach Mucosa	stomach
3	chr19:41646000-41646200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:41646000-41646200	Enhancers	Adipose Nuclei	Adipose
5	chr19:41646000-41646200	Enhancers	Colonic Mucosa	Colon
6	chr19:41646000-41646200	Enhancers	Placenta	Placenta
7	chr19:41646000-41646400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:41646000-41646400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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