Variant report

Variant	rs73931450
Chromosome Location	chr19:41720059-41720060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41717960..41720125-chr19:41724490..41726291,2	K562	blood:
2	chr19:41718642..41720343-chr19:41769329..41771692,2	K562	blood:
3	chr19:41718625..41721132-chr19:41724791..41727372,2	K562	blood:

Variant related genes	Relation type
ENSG00000167601	Chromatin interaction
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2231944	1.00[EUR][1000 genomes]
rs28663378	1.00[EUR][1000 genomes]
rs45623740	1.00[EUR][1000 genomes]
rs61443543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911768	chr19:41680424-41748753	Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41699600-41724400	Weak transcription	Right Atrium	heart
2	chr19:41700000-41722200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:41700000-41724400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:41700200-41724200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:41702000-41722400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:41707800-41723600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr19:41710400-41722400	Weak transcription	HepG2	liver
8	chr19:41713000-41722800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr19:41713200-41724800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr19:41713400-41723800	Weak transcription	Esophagus	oesophagus
11	chr19:41713600-41723800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr19:41713800-41722000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:41713800-41722400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:41713800-41722400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:41713800-41722400	Weak transcription	Fetal Intestine Large	intestine
16	chr19:41713800-41722400	Weak transcription	Fetal Muscle Leg	muscle
17	chr19:41713800-41722600	Weak transcription	A549	lung
18	chr19:41713800-41723800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr19:41713800-41723800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr19:41713800-41724200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr19:41713800-41724400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr19:41713800-41724400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:41714000-41724400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr19:41714400-41722800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr19:41714600-41722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:41714600-41723600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr19:41714600-41724400	Weak transcription	Fetal Intestine Small	intestine
28	chr19:41714800-41724200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr19:41719400-41720200	Enhancers	NHEK	skin
30	chr19:41719800-41720400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:41720000-41720200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr19:41720000-41721200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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