The 2.0 version of rSNPBase

Variant report

Variant rs28665385
Chromosome Location chr4:166253772-166253773
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:166249600-166254000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
2 chr4:166249600-166254000 Enhancers Primary T helper naive cells fromperipheralblood blood
3 chr4:166249600-166266600 Weak transcription Left Ventricle heart
4 chr4:166249800-166255000 Weak transcription Placenta Placenta
5 chr4:166249800-166262400 Weak transcription Placenta Amnion Placenta Amnion
6 chr4:166249800-166262600 Weak transcription Thymus Thymus
7 chr4:166250000-166254600 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr4:166250000-166264600 Weak transcription Rectal Smooth Muscle rectum
9 chr4:166250200-166254000 Enhancers Fetal Lung lung
10 chr4:166250200-166254000 Transcr. at gene 5' and 3' K562 blood
11 chr4:166250200-166259800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr4:166250200-166260400 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr4:166250200-166260800 Weak transcription Stomach Smooth Muscle stomach
14 chr4:166250200-166262600 Weak transcription Spleen Spleen
15 chr4:166250200-166262800 Weak transcription Right Ventricle heart
16 chr4:166250200-166263800 Weak transcription Colon Smooth Muscle Colon
17 chr4:166250200-166265000 Weak transcription Psoas Muscle Psoas
18 chr4:166250200-166265200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr4:166250400-166254000 Transcr. at gene 5' and 3' Dnd41 blood
20 chr4:166250400-166255000 Weak transcription Primary monocytes fromperipheralblood blood
21 chr4:166250400-166255000 Weak transcription Primary hematopoietic stem cells blood
22 chr4:166250400-166255200 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr4:166250400-166255400 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr4:166250400-166255800 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
25 chr4:166250400-166256000 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr4:166250400-166259600 Weak transcription Fetal Kidney kidney
27 chr4:166250400-166260800 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr4:166250400-166260800 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr4:166250400-166262600 Weak transcription Aorta Aorta
30 chr4:166250600-166254000 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr4:166250600-166254600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr4:166250600-166255000 Weak transcription Primary B cells from cord blood blood
33 chr4:166250600-166256200 Weak transcription Pancreatic Islets Pancreatic Islet
34 chr4:166250600-166259800 Weak transcription Adipose Nuclei Adipose
35 chr4:166250600-166259800 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr4:166250600-166263200 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr4:166250600-166265400 Weak transcription Colonic Mucosa Colon
38 chr4:166250600-166266800 Weak transcription A549 lung
39 chr4:166251000-166254000 Flanking Active TSS Cortex derived primary cultured neurospheres brain
40 chr4:166251000-166254000 Transcr. at gene 5' and 3' NHEK skin
41 chr4:166251000-166254400 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
42 chr4:166251000-166254600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr4:166251200-166253800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr4:166251200-166254000 Transcr. at gene 5' and 3' HMEC breast
45 chr4:166251200-166254200 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
46 chr4:166251200-166255600 Weak transcription Primary B cells from peripheral blood blood
47 chr4:166251400-166253800 Genic enhancers Sigmoid Colon Sigmoid Colon
48 chr4:166251400-166254000 Transcr. at gene 5' and 3' iPS-18 Cell Line embryonic stem cell
49 chr4:166251400-166254000 Transcr. at gene 5' and 3' Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr4:166251400-166254000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015