Variant report

Variant	rs28798183
Chromosome Location	chr4:166205245-166205246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10024905	0.84[AFR][1000 genomes]
rs28488397	1.00[AFR][1000 genomes]
rs28665385	1.00[AMR][1000 genomes]
rs28814602	0.84[AFR][1000 genomes]
rs7668523	1.00[AFR][1000 genomes]
rs9992582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv967811	chr4:166200966-166207736	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166144600-166218800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:166170000-166210000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:166170600-166209600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:166177200-166218800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:166177400-166209200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:166177400-166215200	Weak transcription	Fetal Stomach	stomach
7	chr4:166177400-166216000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:166177400-166218600	Weak transcription	Spleen	Spleen
9	chr4:166177400-166219000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:166178400-166205600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:166178800-166207600	Weak transcription	Primary B cells from cord blood	blood
12	chr4:166178800-166209200	Weak transcription	Brain Substantia Nigra	brain
13	chr4:166178800-166209400	Weak transcription	Brain Anterior Caudate	brain
14	chr4:166178800-166218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:166178800-166218800	Weak transcription	Esophagus	oesophagus
16	chr4:166181200-166208200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:166182200-166207000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:166182800-166207800	Weak transcription	Primary T cells from cord blood	blood
19	chr4:166183600-166209200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:166183800-166207000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:166183800-166209600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:166183800-166215200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:166183800-166218800	Weak transcription	Aorta	Aorta
24	chr4:166191400-166209200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:166192600-166207000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr4:166192800-166223000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:166193200-166209200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:166193200-166209200	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:166193200-166209400	Weak transcription	NHEK	skin
30	chr4:166195000-166210000	Weak transcription	Dnd41	blood
31	chr4:166195000-166215800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:166195600-166209400	Weak transcription	Adipose Nuclei	Adipose
33	chr4:166196200-166215800	Weak transcription	Left Ventricle	heart
34	chr4:166196200-166217600	Weak transcription	Gastric	stomach
35	chr4:166196600-166209800	Weak transcription	NH-A	brain
36	chr4:166197400-166210000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:166197600-166209200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:166197600-166216000	Weak transcription	Pancreas	Pancrea
39	chr4:166198200-166230000	Weak transcription	Fetal Muscle Leg	muscle
40	chr4:166199000-166209200	Weak transcription	HSMM	muscle
41	chr4:166199600-166223000	Weak transcription	Ovary	ovary
42	chr4:166200000-166207800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr4:166200200-166208600	Weak transcription	Liver	Liver
44	chr4:166200200-166209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:166200200-166217200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr4:166200400-166207000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr4:166200400-166207200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr4:166200400-166210000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:166200600-166209200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr4:166201000-166217200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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