Variant report

Variant	rs28667291
Chromosome Location	chr4:20508690-20508691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20508646..20510343-chr4:20511869..20513912,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10014346	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10938798	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1828540	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775812	0.81[EUR][1000 genomes]
rs6825654	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:20489200-20529600	Weak transcription	Fetal Stomach	stomach
3	chr4:20489800-20525400	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:20490800-20529600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:20492000-20534800	Weak transcription	Fetal Kidney	kidney
6	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
7	chr4:20494000-20522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:20498400-20512200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:20500400-20512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:20503400-20512000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:20504600-20513800	Weak transcription	Fetal Lung	lung
12	chr4:20507400-20508800	Enhancers	NHDF-Ad	bronchial
13	chr4:20507600-20509000	Enhancers	HUVEC	blood vessel
14	chr4:20507600-20509000	Enhancers	Osteobl	bone
15	chr4:20507600-20509200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:20507600-20522600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:20507800-20509000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:20507800-20509400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:20508200-20509000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:20508400-20509000	Enhancers	NHLF	lung
21	chr4:20508600-20508800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:20508600-20514800	Weak transcription	NHEK	skin
23	chr4:20508600-20522600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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