Variant report

Variant	rs6825654
Chromosome Location	chr4:20518603-20518604
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10014346	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10938798	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1828539	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1828540	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs28667291	0.83[EUR][1000 genomes]
rs3756147	0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap]
rs3775811	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3775812	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625862	0.80[ASN][1000 genomes]
rs6447965	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6447966	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs729918	0.94[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:20489200-20529600	Weak transcription	Fetal Stomach	stomach
3	chr4:20489800-20525400	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:20490800-20529600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:20492000-20534800	Weak transcription	Fetal Kidney	kidney
6	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
7	chr4:20494000-20522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:20507600-20522600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:20508600-20522600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:20508800-20534000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:20509000-20522600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:20511800-20576200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:20512800-20522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:20513200-20534600	Weak transcription	Fetal Brain Male	brain
15	chr4:20514400-20519000	Strong transcription	Fetal Lung	lung
16	chr4:20514400-20522200	Weak transcription	Osteobl	bone
17	chr4:20514800-20520600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:20515000-20520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:20515000-20522400	Weak transcription	NHEK	skin
20	chr4:20517800-20519800	Strong transcription	NHDF-Ad	bronchial

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