Variant report

Variant	rs3756147
Chromosome Location	chr4:20489479-20489480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1828539	0.89[EUR][1000 genomes]
rs3775811	0.83[ASW][hapmap];0.84[CEU][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs480361	0.84[ASN][1000 genomes]
rs485909	0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs510736	0.81[ASN][1000 genomes]
rs569230	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs6825654	0.88[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap]
rs729918	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:20465000-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:20466800-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20480200-20493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:20483200-20490400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:20484800-20495200	Weak transcription	NHLF	lung
7	chr4:20485400-20491800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:20486000-20491200	Strong transcription	Fetal Lung	lung
9	chr4:20488000-20490000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:20488200-20490400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:20488200-20491200	Weak transcription	Fetal Intestine Small	intestine
12	chr4:20488200-20493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:20489200-20489600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:20489200-20489600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:20489200-20489800	Enhancers	Colon Smooth Muscle	Colon
16	chr4:20489200-20489800	Enhancers	NHDF-Ad	bronchial
17	chr4:20489200-20489800	Enhancers	Osteobl	bone
18	chr4:20489200-20490000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:20489200-20529600	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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