Variant report

Variant	rs569230
Chromosome Location	chr4:20489024-20489025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13130853	0.83[EUR][1000 genomes]
rs3756147	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs480361	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs484614	0.91[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs485909	1.00[ASW][hapmap];0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs510736	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs525684	0.81[CHB][hapmap];0.87[YRI][hapmap]
rs620681	0.83[CEU][hapmap];0.87[CHB][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs625862	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:20465000-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:20466800-20489200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:20466800-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:20480200-20493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:20483200-20490400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:20484800-20495200	Weak transcription	NHLF	lung
8	chr4:20485200-20489200	Weak transcription	Osteobl	bone
9	chr4:20485400-20491800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:20486000-20489200	Weak transcription	NHDF-Ad	bronchial
11	chr4:20486000-20491200	Strong transcription	Fetal Lung	lung
12	chr4:20488000-20490000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:20488200-20490400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:20488200-20491200	Weak transcription	Fetal Intestine Small	intestine
15	chr4:20488200-20493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:20488400-20489200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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