Variant report

Variant	rs620681
Chromosome Location	chr4:20493225-20493226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20488243..20490673-chr4:20492136..20494455,3	K562	blood:
2	chr4:20492411..20494046-chr4:20509855..20511379,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13130853	0.88[EUR][1000 genomes]
rs480361	0.92[EUR][1000 genomes]
rs484614	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs485909	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs510736	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs525684	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs540087	0.83[ASN][1000 genomes]
rs556816	0.83[CHB][hapmap]
rs569230	0.83[CEU][hapmap];0.87[CHB][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs625862	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878742	chr4:20473799-20527864	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20464600-20532600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:20465000-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:20466800-20495000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:20480200-20493400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:20484800-20495200	Weak transcription	NHLF	lung
6	chr4:20489200-20529600	Weak transcription	Fetal Stomach	stomach
7	chr4:20489600-20495000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:20489800-20493400	Weak transcription	NHDF-Ad	bronchial
9	chr4:20489800-20494600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:20489800-20525400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:20490000-20495200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:20490000-20496600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:20490400-20495600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:20490600-20493800	Strong transcription	Osteobl	bone
15	chr4:20490800-20495400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:20490800-20529600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:20491200-20493400	Weak transcription	Fetal Lung	lung
18	chr4:20492000-20534800	Weak transcription	Fetal Kidney	kidney
19	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
20	chr4:20493000-20494000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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