Variant report

Variant	rs28669724
Chromosome Location	chr4:119973909-119973910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10005727	1.00[AMR][1000 genomes]
rs10032469	1.00[AMR][1000 genomes]
rs10032717	1.00[AMR][1000 genomes]
rs28374711	1.00[AMR][1000 genomes]
rs28375177	1.00[AMR][1000 genomes]
rs28811044	1.00[AMR][1000 genomes]
rs28814970	1.00[AMR][1000 genomes]
rs58567791	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119964000-119980400	Weak transcription	Fetal Stomach	stomach
2	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:119967800-119975200	Weak transcription	Pancreas	Pancrea
4	chr4:119967800-119977400	Weak transcription	Gastric	stomach
5	chr4:119968800-119974000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:119970400-119978600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:119970400-119981400	Weak transcription	Ovary	ovary
8	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:119972000-119976200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:119973200-119974400	Enhancers	Fetal Heart	heart
11	chr4:119973200-119974400	Enhancers	Psoas Muscle	Psoas
12	chr4:119973200-119975600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:119973400-119974200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:119973600-119974400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:119973600-119975200	Weak transcription	Right Ventricle	heart
16	chr4:119973800-119975200	Weak transcription	Left Ventricle	heart
17	chr4:119973800-119978200	Weak transcription	Aorta	Aorta
18	chr4:119973800-119978800	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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