Variant report

Variant	rs58567791
Chromosome Location	chr4:119954756-119954757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119948393..119951325-chr4:119952925..119955236,2	MCF-7	breast:
2	chr4:119947641..119949171-chr4:119953540..119955900,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10005727	1.00[AMR][1000 genomes]
rs10032469	1.00[AMR][1000 genomes]
rs10032717	1.00[AMR][1000 genomes]
rs28374711	1.00[AMR][1000 genomes]
rs28375177	1.00[AMR][1000 genomes]
rs28669724	1.00[AMR][1000 genomes]
rs28811044	1.00[AMR][1000 genomes]
rs28814970	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119941800-119961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:119946800-119957000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:119947200-119959800	Weak transcription	Brain Anterior Caudate	brain
4	chr4:119947400-119955400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:119947400-119955600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:119948200-119955000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:119948200-119955400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:119948200-119955400	Weak transcription	HMEC	breast
9	chr4:119948200-119961000	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:119948200-119961800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:119948200-119961800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:119948600-119955200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:119949200-119955000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:119949200-119957000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:119949200-119961000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:119949200-119961000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:119949600-119959200	Weak transcription	Right Atrium	heart
18	chr4:119949800-119955200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:119949800-119955600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:119949800-119959800	Weak transcription	A549	lung
21	chr4:119951000-119956000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:119951000-119956600	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
23	chr4:119951200-119955000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:119951400-119955400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:119951800-119955600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:119952200-119961000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:119952400-119955600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:119952400-119956400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:119952600-119956400	Weak transcription	Fetal Kidney	kidney
30	chr4:119952600-119961800	Weak transcription	Brain Angular Gyrus	brain
31	chr4:119953000-119954800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:119953000-119954800	Weak transcription	Spleen	Spleen
33	chr4:119953000-119955800	Weak transcription	Colonic Mucosa	Colon
34	chr4:119953000-119955800	Weak transcription	Gastric	stomach
35	chr4:119953200-119955200	Weak transcription	Fetal Intestine Small	intestine
36	chr4:119953200-119955400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:119953200-119955400	Weak transcription	NHLF	lung
38	chr4:119953200-119955600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:119953200-119955600	Weak transcription	Left Ventricle	heart
40	chr4:119953200-119955600	Weak transcription	Right Ventricle	heart
41	chr4:119953200-119955800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:119953200-119955800	Weak transcription	Lung	lung
43	chr4:119953200-119957000	Weak transcription	Adipose Nuclei	Adipose
44	chr4:119953200-119957000	Weak transcription	Ovary	ovary
45	chr4:119953200-119961000	Weak transcription	Brain Substantia Nigra	brain
46	chr4:119953200-119961800	Weak transcription	Esophagus	oesophagus
47	chr4:119953400-119956200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:119953600-119963000	Weak transcription	Fetal Intestine Large	intestine
49	chr4:119953800-119955800	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr4:119953800-119955800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links