Variant report

Variant	rs2867169
Chromosome Location	chr1:55908585-55908586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11206584	0.84[AFR][1000 genomes]
rs11206595	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489644	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs399610	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4926687	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6588560	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7529184	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs769891	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55904200-55908800	Weak transcription	HepG2	liver
2	chr1:55905200-55909200	Weak transcription	HUVEC	blood vessel
3	chr1:55906800-55914600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:55907000-55915600	Enhancers	NHDF-Ad	bronchial
5	chr1:55907200-55908800	Weak transcription	NH-A	brain
6	chr1:55907400-55908600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:55907400-55909000	Weak transcription	HSMMtube	muscle
8	chr1:55907600-55908800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:55907800-55912600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:55907800-55915800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:55908000-55909000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:55908000-55915000	Enhancers	Hela-S3	cervix
13	chr1:55908200-55908600	Weak transcription	Osteobl	bone
14	chr1:55908200-55909400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:55908200-55910400	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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