Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11206584	0.83[AFR][1000 genomes]
rs11206595	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2489644	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2867169	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399610	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6588560	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529184	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs769891	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55906800-55914600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:55907000-55915600	Enhancers	NHDF-Ad	bronchial
3	chr1:55907800-55915800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:55908000-55915000	Enhancers	Hela-S3	cervix
5	chr1:55908800-55914400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:55908800-55915000	Enhancers	NHLF	lung
7	chr1:55909400-55913000	Weak transcription	HepG2	liver
8	chr1:55909600-55913800	Weak transcription	Fetal Lung	lung
9	chr1:55909600-55913800	Weak transcription	HMEC	breast
10	chr1:55910000-55916600	Weak transcription	Aorta	Aorta
11	chr1:55910400-55913000	Weak transcription	HUVEC	blood vessel
12	chr1:55911400-55913400	Enhancers	Osteobl	bone
13	chr1:55911600-55914600	Enhancers	A549	lung
14	chr1:55911800-55914000	Enhancers	HSMMtube	muscle
15	chr1:55912400-55913600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:55912400-55913800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:55912600-55913600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:55912600-55913600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:55912600-55913800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:55912600-55913800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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