Variant report

Variant	rs28676537
Chromosome Location	chr4:147865366-147865367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10034043	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1437263	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1469921	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1509333	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2028126	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2289164	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2304536	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62329363	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs748826	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs748827	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs881591	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs882189	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs969510	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs969512	0.84[AMR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147863800-147865800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr4:147864000-147866200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:147864200-147865600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:147864200-147866600	Weak transcription	Brain Germinal Matrix	brain
5	chr4:147864200-147866600	Weak transcription	Fetal Thymus	thymus
6	chr4:147864200-147866600	Weak transcription	Thymus	Thymus
7	chr4:147864400-147865600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:147864400-147865600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:147864800-147865800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:147865000-147866000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:147865200-147865400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:147865200-147865600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr4:147865200-147865800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:147865200-147866600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:147865200-147866600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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