Variant report

Variant	rs286766
Chromosome Location	chr5:107521677-107521678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10056658	0.86[EUR][1000 genomes]
rs10057274	0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10057905	0.93[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10070565	0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10477889	0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes]
rs10477894	0.86[EUR][1000 genomes]
rs11240960	0.82[JPT][hapmap]
rs12519091	0.82[JPT][hapmap]
rs12521975	1.00[ASW][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes]
rs13174270	0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs158417	0.90[YRI][hapmap]
rs158418	0.89[YRI][hapmap]
rs169592	0.89[YRI][hapmap]
rs1839224	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2044711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2122157	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs286760	0.90[YRI][hapmap]
rs286762	0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs286765	0.83[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286768	0.87[EUR][1000 genomes]
rs286772	0.90[YRI][hapmap]
rs286806	1.00[YRI][hapmap]
rs286815	0.90[YRI][hapmap]
rs286822	0.90[YRI][hapmap]
rs28868900	0.85[EUR][1000 genomes]
rs2922409	0.93[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2922410	0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2922411	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2922413	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2922414	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2922415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2922416	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2922419	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2922434	1.00[ASW][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2966794	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2966805	1.00[ASW][hapmap];0.80[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966806	0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966807	0.88[EUR][1000 genomes]
rs2966808	0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966809	0.93[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966810	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966811	0.83[EUR][1000 genomes]
rs2966812	0.82[ASW][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966815	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966817	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2966819	0.93[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34019963	0.86[EUR][1000 genomes]
rs34088844	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35053804	0.88[EUR][1000 genomes]
rs35624833	0.87[EUR][1000 genomes]
rs35959276	0.86[EUR][1000 genomes]
rs3756573	0.93[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs399438	0.93[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4276393	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4385196	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4957750	0.93[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66855775	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6860212	0.86[TSI][hapmap];0.93[EUR][1000 genomes]
rs715638	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107475200-107527400	Weak transcription	Liver	Liver
2	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
3	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
4	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
5	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:107505400-107536800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:107505600-107521800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:107506200-107529400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:107506600-107522800	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:107506600-107524600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:107508400-107523400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:107510600-107532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:107511000-107528000	Weak transcription	Fetal Intestine Small	intestine
14	chr5:107511400-107548400	Weak transcription	Primary B cells from cord blood	blood
15	chr5:107514800-107522800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:107516800-107551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:107517000-107529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:107518000-107532000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:107518600-107521800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:107518600-107523000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:107518800-107527400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:107519200-107522000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:107519400-107522000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr5:107519400-107527000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:107519600-107522000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr5:107519600-107527400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:107520000-107522600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr5:107520000-107524800	Weak transcription	Brain Anterior Caudate	brain
31	chr5:107520200-107526000	Weak transcription	Fetal Brain Male	brain
32	chr5:107520800-107521800	Strong transcription	Placenta	Placenta
33	chr5:107521000-107526400	Weak transcription	Lung	lung
34	chr5:107521200-107521800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr5:107521200-107521800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:107521400-107523000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr5:107521400-107527400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:107521400-107528800	Weak transcription	Ovary	ovary
39	chr5:107521400-107528800	Weak transcription	HSMM	muscle
40	chr5:107521400-107529000	Weak transcription	Fetal Stomach	stomach
41	chr5:107521400-107529400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:107521600-107524800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr5:107521600-107526400	Weak transcription	Brain Hippocampus Middle	brain
44	chr5:107521600-107528600	Weak transcription	Primary hematopoietic stem cells	blood

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