Variant report

Variant	rs35053804
Chromosome Location	chr5:107652487-107652488
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10056658	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10057274	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10057905	0.92[EUR][1000 genomes]
rs10070565	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10477889	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10477894	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12521975	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13174270	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13178456	0.80[AFR][1000 genomes]
rs1839224	0.92[EUR][1000 genomes]
rs2044711	0.92[EUR][1000 genomes]
rs2122157	0.92[EUR][1000 genomes]
rs286762	0.90[EUR][1000 genomes]
rs286765	0.88[EUR][1000 genomes]
rs286766	0.88[EUR][1000 genomes]
rs28868900	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2922409	0.91[EUR][1000 genomes]
rs2922410	0.91[EUR][1000 genomes]
rs2922411	0.92[EUR][1000 genomes]
rs2922413	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2922414	0.92[EUR][1000 genomes]
rs2922415	0.92[EUR][1000 genomes]
rs2922416	0.92[EUR][1000 genomes]
rs2922419	0.92[EUR][1000 genomes]
rs2922434	0.92[EUR][1000 genomes]
rs2966794	0.92[EUR][1000 genomes]
rs2966805	0.92[EUR][1000 genomes]
rs2966806	0.92[EUR][1000 genomes]
rs2966807	0.84[EUR][1000 genomes]
rs2966808	0.92[EUR][1000 genomes]
rs2966809	0.92[EUR][1000 genomes]
rs2966810	0.92[EUR][1000 genomes]
rs2966811	0.81[EUR][1000 genomes]
rs2966812	0.92[EUR][1000 genomes]
rs2966815	0.92[EUR][1000 genomes]
rs2966817	0.91[EUR][1000 genomes]
rs2966819	0.92[EUR][1000 genomes]
rs34019963	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34088844	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35624833	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35959276	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756573	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs399438	0.90[EUR][1000 genomes]
rs4276393	0.92[EUR][1000 genomes]
rs4385196	0.94[EUR][1000 genomes]
rs4957553	0.80[AFR][1000 genomes]
rs4957750	0.94[EUR][1000 genomes]
rs55896795	0.80[AFR][1000 genomes]
rs66855775	0.93[EUR][1000 genomes]
rs6860212	0.85[EUR][1000 genomes]
rs715638	0.87[EUR][1000 genomes]
rs9326725	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882685	chr5:107564746-107695558	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv882687	chr5:107595383-107695558	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv882688	chr5:107595383-107715746	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1032608	chr5:107627193-107671907	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1019657	chr5:107629430-107677211	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1025828	chr5:107634887-107676322	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1030202	chr5:107634887-107680335	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1018396	chr5:107634887-107684450	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1033956	chr5:107640933-107680335	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1029462	chr5:107645821-107680335	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107615000-107705600	Weak transcription	Left Ventricle	heart
2	chr5:107615200-107660400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:107620600-107678600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:107630200-107662600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:107633200-107661600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:107634200-107679400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:107639800-107697200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:107641600-107662200	Weak transcription	Primary T cells from cord blood	blood
9	chr5:107644600-107669600	Weak transcription	Primary B cells from cord blood	blood
10	chr5:107648000-107704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:107651000-107662200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:107652000-107655800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:107652000-107658600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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