Variant report

Variant	rs2867731
Chromosome Location	chr11:59209778-59209779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59209777-59209827	ECC-1	luminal epithelium:	n/a
2	chr11:59209777-59209827	HL-60	blood:	n/a
3	chr11:59209777-59209827	T-47D	breast:	n/a
4	chr11:59209777-59209827	GM06990	blood:	n/a
5	chr11:59209775-59209825	Caco-2	colon:	n/a
6	chr11:59209777-59209827	HRCEpiC	kidney:	n/a
7	chr11:59209775-59209825	HPAEpiC	pulmonary alveolar:	n/a
8	chr11:59209777-59209827	HRE	kidney:	n/a
9	chr11:59209775-59209825	BE2_C	brain:	n/a
10	chr11:59209775-59209825	GM06990	blood:	n/a
11	chr11:59209775-59209825	PrEC	prostate:	n/a
12	chr11:59209777-59209827	HPAEpiC	pulmonary alveolar:	n/a
13	chr11:59209775-59209825	AoSMC	blood vessel:	n/a
14	chr11:59209777-59209827	HCT-116	colon:	n/a
15	chr11:59209775-59209825	HMEC	breast:	n/a
16	chr11:59209775-59209825	HEEpiC	esophagus:	n/a
17	chr11:59209777-59209827	RPTEC	kidney:	n/a
18	chr11:59209775-59209825	HUVEC	blood vessel:	n/a
19	chr11:59209777-59209827	GM12891	blood:	n/a
20	chr11:59209775-59209825	HCM	heart:	n/a
21	chr11:59209777-59209827	SAEC	small airway:	n/a
22	chr11:59209777-59209827	K562	blood:	n/a
23	chr11:59209775-59209825	NB4	blood:	n/a
24	chr11:59209775-59209825	NHDF-neo	bronchial:	n/a
25	chr11:59209777-59209827	HRPEpiC	eye:	n/a
26	chr11:59209775-59209825	GM12878	blood:	n/a
27	chr11:59209775-59209825	SAEC	small airway:	n/a
28	chr11:59209777-59209827	NHDF-neo	bronchial:	n/a
29	chr11:59209777-59209827	MCF-7	breast:	n/a
30	chr11:59209775-59209825	AG09319	gingival:	n/a
31	chr11:59209777-59209827	BE2_C	brain:	n/a
32	chr11:59209775-59209825	HCPEpiC	choroid plexus:	n/a
33	chr11:59209777-59209827	AG09309	skin:	n/a
34	chr11:59209775-59209825	A549	lung:	n/a
35	chr11:59209775-59209825	ovcar-3	ovarian:	n/a
36	chr11:59209777-59209827	SK-N-MC	brain:	n/a
37	chr11:59209775-59209825	HepG2	liver:	n/a
38	chr11:59209777-59209827	ProgFib	skin:	n/a
39	chr11:59209775-59209825	T-47D	breast:	n/a
40	chr11:59209775-59209825	MCF10A-Er-Src	breast:	n/a
41	chr11:59209777-59209827	GM12878	blood:	n/a
42	chr11:59209777-59209827	Caco-2	colon:	n/a
43	chr11:59209777-59209827	HNPCEpiC	eye:	n/a
44	chr11:59209777-59209827	A549	lung:	n/a
45	chr11:59209777-59209827	NT2-D1	testis:	n/a
46	chr11:59209777-59209827	SKMC	muscle:	n/a
47	chr11:59209775-59209825	SK-N-SH_RA	brain:	n/a
48	chr11:59209777-59209827	HCPEpiC	choroid plexus:	n/a
49	chr11:59209775-59209825	GM12891	blood:	n/a
50	chr11:59209775-59209825	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
OR5A1	CpG island

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1026319	0.80[AFR][1000 genomes]
rs10736699	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750922	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896974	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229957	0.87[EUR][1000 genomes]
rs11229958	0.87[EUR][1000 genomes]
rs11602535	0.81[EUR][1000 genomes]
rs11605552	0.92[EUR][1000 genomes]
rs12787182	0.81[EUR][1000 genomes]
rs1453541	0.93[EUR][1000 genomes]
rs1453542	0.87[EUR][1000 genomes]
rs1453548	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17584022	0.81[EUR][1000 genomes]
rs1901855	0.94[EUR][1000 genomes]
rs1901856	0.87[EUR][1000 genomes]
rs2867748	0.91[EUR][1000 genomes]
rs4939291	0.87[EUR][1000 genomes]
rs6591536	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119928	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120797	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941591	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943953	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7947471	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952071	0.88[EUR][1000 genomes]
rs896877	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs896878	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9665874	0.91[EUR][1000 genomes]
rs9988851	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv983153	chr11:59197223-59222105	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv975342	chr11:59203908-59237268	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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