Variant report
| Variant | rs9665874 |
|---|---|
| Chromosome Location | chr11:59231505-59231506 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10736699 | 0.92[EUR][1000 genomes] |
| rs10750922 | 0.88[EUR][1000 genomes] |
| rs10896974 | 0.92[EUR][1000 genomes] |
| rs11229957 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11229958 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11602535 | 0.81[EUR][1000 genomes] |
| rs11605552 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12787182 | 0.81[EUR][1000 genomes] |
| rs1453541 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1453542 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17584022 | 0.81[EUR][1000 genomes] |
| rs1901855 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1901856 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2867731 | 0.91[EUR][1000 genomes] |
| rs2867748 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4939291 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6591536 | 0.92[EUR][1000 genomes] |
| rs7119928 | 0.91[EUR][1000 genomes] |
| rs7120797 | 0.91[EUR][1000 genomes] |
| rs7941591 | 0.92[EUR][1000 genomes] |
| rs7943953 | 0.92[EUR][1000 genomes] |
| rs7947471 | 0.91[EUR][1000 genomes] |
| rs7952071 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs896877 | 0.91[EUR][1000 genomes] |
| rs896878 | 0.91[EUR][1000 genomes] |
| rs9988851 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046084 | chr11:59034871-59314519 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv975342 | chr11:59203908-59237268 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | TF binding regionCpG island | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv274882 | chr11:59231081-59236770 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:59231000-59231800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
