Variant report

Variant	rs2868425
Chromosome Location	chr3:150083011-150083012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150081211..150094856-chr3:150124384..150132921,41	MCF-7	breast:
2	chr3:150081232..150084545-chr3:150085072..150089813,5	K562	blood:
3	chr3:150078900..150083157-chr3:150124558..150126454,5	K562	blood:
4	chr3:150081035..150094397-chr3:150122156..150134666,40	MCF-7	breast:
5	chr3:150077481..150080470-chr3:150082450..150084870,2	K562	blood:
6	chr3:150081124..150084449-chr3:150124687..150129111,4	K562	blood:
7	chr3:150081232..150084840-chr3:150085072..150088254,3	K562	blood:
8	chr3:150082769..150087099-chr3:150088300..150090870,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10513374	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10935800	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12639090	0.81[JPT][hapmap]
rs13080841	0.80[ASN][1000 genomes]
rs13080858	0.80[ASN][1000 genomes]
rs13082720	0.81[ASN][1000 genomes]
rs1450335	0.81[ASN][1000 genomes]
rs1450336	0.81[ASN][1000 genomes]
rs1450344	0.81[JPT][hapmap]
rs1584586	0.87[JPT][hapmap]
rs16862627	0.87[JPT][hapmap]
rs16862644	0.86[JPT][hapmap]
rs16862676	0.86[JPT][hapmap]
rs1868672	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1868673	0.81[JPT][hapmap]
rs4423794	0.81[JPT][hapmap]
rs4681205	0.86[JPT][hapmap]
rs4681612	0.83[AMR][1000 genomes]
rs4681615	0.81[ASN][1000 genomes]
rs4681618	0.86[JPT][hapmap]
rs4681619	0.80[ASN][1000 genomes]
rs6762432	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6770424	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6792759	0.91[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs6810143	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7427177	0.81[ASN][1000 genomes]
rs7626725	0.81[ASN][1000 genomes]
rs7651353	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7651989	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9289810	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9784281	0.80[ASN][1000 genomes]
rs9784335	0.81[JPT][hapmap]
rs9826729	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs9882777	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150074000-150086600	Weak transcription	HUVEC	blood vessel
2	chr3:150080800-150085200	Weak transcription	Hela-S3	cervix
3	chr3:150081200-150088200	Weak transcription	Stomach Mucosa	stomach
4	chr3:150082400-150083200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr3:150082400-150089400	Weak transcription	HepG2	liver
6	chr3:150082600-150083400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:150082600-150084000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:150082600-150084000	Enhancers	K562	blood
9	chr3:150082800-150083800	Enhancers	HMEC	breast
10	chr3:150083000-150083200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:150083000-150083200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:150083000-150083200	Enhancers	Esophagus	oesophagus
13	chr3:150083000-150083200	Enhancers	Fetal Intestine Small	intestine
14	chr3:150083000-150083400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:150083000-150083400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:150083000-150083400	Enhancers	NHLF	lung
17	chr3:150083000-150083600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:150083000-150083600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:150083000-150083600	Enhancers	HSMMtube	muscle
20	chr3:150083000-150083800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:150083000-150083800	Enhancers	NH-A	brain
22	chr3:150083000-150083800	Enhancers	Osteobl	bone
23	chr3:150083000-150084000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:150083000-150084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:150083000-150084000	Enhancers	A549	lung
26	chr3:150083000-150084000	Enhancers	GM12878-XiMat	blood
27	chr3:150083000-150084000	Enhancers	HSMM	muscle
28	chr3:150083000-150084000	Enhancers	NHDF-Ad	bronchial
29	chr3:150083000-150084200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:150083000-150084200	Enhancers	NHEK	skin

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