Variant report

Variant	rs1450336
Chromosome Location	chr3:150111562-150111563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150076190..150078663-chr3:150110985..150112946,2	MCF-7	breast:
2	chr3:150110814..150113461-chr3:150215165..150218125,2	K562	blood:
3	chr3:150109427..150111930-chr3:150114041..150117161,4	K562	blood:
4	chr3:150106073..150107680-chr3:150109280..150112020,2	MCF-7	breast:
5	chr3:150111194..150113689-chr3:150123124..150124651,2	MCF-7	breast:
6	chr3:150111434..150116692-chr3:150125467..150130603,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10513374	0.80[ASN][1000 genomes]
rs10935800	0.80[ASN][1000 genomes]
rs11711035	0.82[ASN][1000 genomes]
rs11719977	0.80[ASN][1000 genomes]
rs12638309	0.80[ASN][1000 genomes]
rs13080841	0.82[ASN][1000 genomes]
rs13080858	0.82[ASN][1000 genomes]
rs13082720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099758	0.81[ASN][1000 genomes]
rs13321876	0.80[ASN][1000 genomes]
rs1450335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450344	0.92[ASN][1000 genomes]
rs16862651	0.99[ASN][1000 genomes]
rs1868672	0.96[ASN][1000 genomes]
rs1868673	0.90[ASN][1000 genomes]
rs2167177	0.99[ASN][1000 genomes]
rs28514580	0.99[ASN][1000 genomes]
rs2868425	0.81[ASN][1000 genomes]
rs4681206	0.82[ASN][1000 genomes]
rs4681615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4681619	0.99[ASN][1000 genomes]
rs67319423	0.80[ASN][1000 genomes]
rs6762432	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6770424	0.96[ASN][1000 genomes]
rs6792759	0.99[ASN][1000 genomes]
rs6810143	0.96[ASN][1000 genomes]
rs7427177	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626725	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651353	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651989	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289810	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9784281	0.99[ASN][1000 genomes]
rs9784335	0.82[ASN][1000 genomes]
rs9813752	0.99[ASN][1000 genomes]
rs9826729	0.80[ASN][1000 genomes]
rs9846873	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9882777	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv1828464	chr3:150096071-150149868	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
2	chr3:150102800-150118200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:150103600-150112200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:150107200-150112400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:150107600-150114400	Weak transcription	Fetal Heart	heart
6	chr3:150108400-150111600	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:150109200-150112400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:150109200-150124400	Weak transcription	HSMM	muscle
9	chr3:150109200-150124600	Weak transcription	NHLF	lung
10	chr3:150109400-150114400	Weak transcription	HSMMtube	muscle
11	chr3:150109400-150114600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:150109600-150112400	Weak transcription	NHDF-Ad	bronchial
13	chr3:150109600-150114800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:150109600-150116800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:150109600-150121200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:150109800-150114600	Weak transcription	HUVEC	blood vessel
17	chr3:150111000-150112000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:150111000-150112000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:150111000-150112000	Enhancers	NHEK	skin
20	chr3:150111200-150112000	Enhancers	HMEC	breast
21	chr3:150111200-150112600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:150111400-150111600	Enhancers	Fetal Lung	lung
23	chr3:150111400-150113200	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links