Variant report

Variant	rs13099758
Chromosome Location	chr3:150162823-150162824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150154296..150156771-chr3:150162812..150165621,2	MCF-7	breast:
2	chr3:150156876..150160241-chr3:150160322..150163435,4	K562	blood:
3	chr3:150145113..150147525-chr3:150161177..150163956,3	MCF-7	breast:
4	chr3:150162355..150164393-chr3:150179052..150181274,2	MCF-7	breast:
5	chr3:150161430..150164240-chr3:150167006..150169731,3	K562	blood:
6	chr3:150160697..150162930-chr3:150175362..150178307,2	MCF-7	breast:
7	chr3:150161437..150164361-chr3:150177482..150180288,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10513373	0.80[ASN][1000 genomes]
rs10513374	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10935800	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11711035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719977	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12638309	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639090	0.97[ASN][1000 genomes]
rs13069723	0.91[AFR][1000 genomes]
rs13081231	0.96[ASN][1000 genomes]
rs13082720	0.81[ASN][1000 genomes]
rs13321876	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1450335	0.81[ASN][1000 genomes]
rs1450336	0.81[ASN][1000 genomes]
rs16862627	0.80[ASN][1000 genomes]
rs16862644	0.80[ASN][1000 genomes]
rs28514580	0.81[ASN][1000 genomes]
rs28517277	0.90[AFR][1000 genomes]
rs4423794	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4681203	0.96[ASN][1000 genomes]
rs4681204	0.80[ASN][1000 genomes]
rs4681205	0.80[ASN][1000 genomes]
rs4681206	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4681207	0.80[ASN][1000 genomes]
rs4681615	0.81[ASN][1000 genomes]
rs4681616	0.80[ASN][1000 genomes]
rs4681617	0.80[ASN][1000 genomes]
rs4681618	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4681619	0.80[ASN][1000 genomes]
rs58628422	0.96[ASN][1000 genomes]
rs62269065	0.87[AFR][1000 genomes]
rs67319423	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6762432	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6784048	0.96[ASN][1000 genomes]
rs6792734	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792759	0.80[ASN][1000 genomes]
rs6795124	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73163692	0.80[ASN][1000 genomes]
rs73165707	0.80[ASN][1000 genomes]
rs7427177	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7626725	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7651353	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7651989	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs879634	0.85[AFR][1000 genomes]
rs9289810	0.81[ASN][1000 genomes]
rs9784281	0.80[ASN][1000 genomes]
rs9784335	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9813752	0.81[ASN][1000 genomes]
rs9826729	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9846873	0.82[ASN][1000 genomes]
rs9865031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9882777	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150131000-150166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150132400-150175000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:150132400-150175000	Weak transcription	Placenta	Placenta
4	chr3:150134600-150174800	Weak transcription	Dnd41	blood
5	chr3:150135000-150175600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:150137200-150176200	Weak transcription	HepG2	liver
7	chr3:150140000-150164000	Weak transcription	Fetal Intestine Small	intestine
8	chr3:150140000-150171800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:150140000-150176200	Weak transcription	Fetal Stomach	stomach
10	chr3:150141400-150175200	Weak transcription	GM12878-XiMat	blood
11	chr3:150141800-150164400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:150141800-150165000	Weak transcription	Brain Germinal Matrix	brain
13	chr3:150141800-150166800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:150144200-150179000	Weak transcription	Aorta	Aorta
15	chr3:150146000-150165000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:150147000-150167200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:150148400-150165200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:150149600-150176000	Weak transcription	Fetal Brain Female	brain
19	chr3:150151400-150171200	Weak transcription	Brain Anterior Caudate	brain
20	chr3:150151400-150171600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr3:150151800-150165000	Weak transcription	Ovary	ovary
22	chr3:150151800-150167000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:150152200-150164400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:150152200-150166000	Weak transcription	Lung	lung
25	chr3:150152200-150168800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr3:150152200-150171200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:150152400-150164000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:150152400-150165200	Weak transcription	Fetal Heart	heart
29	chr3:150152400-150166800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:150152800-150165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr3:150153000-150175600	Weak transcription	Right Ventricle	heart
32	chr3:150153600-150178200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr3:150153800-150176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:150154000-150175800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr3:150154200-150176000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:150154600-150165200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr3:150154800-150164600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr3:150154800-150164800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr3:150154800-150165600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:150157800-150173000	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:150158000-150165000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:150158600-150165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:150158600-150178200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:150159200-150163000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:150159200-150166200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr3:150159600-150164400	Weak transcription	Stomach Mucosa	stomach
47	chr3:150159600-150165200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:150159800-150165000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr3:150159800-150171600	Weak transcription	Brain Substantia Nigra	brain
50	chr3:150159800-150175600	Weak transcription	Thymus	Thymus

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