Variant report

Variant	rs62269065
Chromosome Location	chr3:150175558-150175559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150160697..150162930-chr3:150175362..150178307,2	MCF-7	breast:
2	chr3:150159940..150161859-chr3:150175049..150176964,2	K562	blood:
3	chr3:150124105..150129008-chr3:150174357..150179992,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10513374	0.87[AFR][1000 genomes]
rs11706784	0.84[ASN][1000 genomes]
rs11711035	0.87[AFR][1000 genomes]
rs11719654	0.88[ASN][1000 genomes]
rs12054166	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12629077	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13069723	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13092207	0.88[ASN][1000 genomes]
rs13092341	0.81[ASN][1000 genomes]
rs13099758	0.87[AFR][1000 genomes]
rs16862648	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068659	0.84[ASN][1000 genomes]
rs28517277	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28587425	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28672230	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs33988810	0.88[ASN][1000 genomes]
rs34192407	0.88[ASN][1000 genomes]
rs34384576	0.85[ASN][1000 genomes]
rs34518530	0.84[ASN][1000 genomes]
rs34616287	0.96[ASN][1000 genomes]
rs34991086	0.84[ASN][1000 genomes]
rs35704634	0.81[ASN][1000 genomes]
rs35725711	0.96[ASN][1000 genomes]
rs35982655	0.84[ASN][1000 genomes]
rs4423794	0.91[AFR][1000 genomes]
rs4681206	0.87[AFR][1000 genomes]
rs4681618	0.87[AFR][1000 genomes]
rs56040746	0.88[ASN][1000 genomes]
rs6440677	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6763024	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs879634	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9682043	0.92[ASN][1000 genomes]
rs9838366	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9865031	0.85[AFR][1000 genomes]
rs9875882	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150135000-150175600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:150137200-150176200	Weak transcription	HepG2	liver
3	chr3:150140000-150176200	Weak transcription	Fetal Stomach	stomach
4	chr3:150144200-150179000	Weak transcription	Aorta	Aorta
5	chr3:150149600-150176000	Weak transcription	Fetal Brain Female	brain
6	chr3:150153000-150175600	Weak transcription	Right Ventricle	heart
7	chr3:150153600-150178200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:150153800-150176000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:150154000-150175800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:150154200-150176000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:150158600-150178200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:150159800-150175600	Weak transcription	Thymus	Thymus
13	chr3:150159800-150176200	Weak transcription	Spleen	Spleen
14	chr3:150160200-150175800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:150160600-150176200	Weak transcription	Esophagus	oesophagus
16	chr3:150160600-150178000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:150160800-150175800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:150160800-150176200	Weak transcription	Fetal Kidney	kidney
19	chr3:150160800-150176200	Weak transcription	Gastric	stomach
20	chr3:150165400-150176200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr3:150165600-150176800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:150165600-150178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:150165600-150187200	Weak transcription	Small Intestine	intestine
24	chr3:150165800-150176200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr3:150166000-150186200	Weak transcription	Brain Germinal Matrix	brain
26	chr3:150166400-150185600	Weak transcription	Lung	lung
27	chr3:150167200-150176200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:150167400-150176400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:150168800-150176200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:150169000-150175600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:150169000-150176200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr3:150169000-150176200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:150169200-150175800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:150169400-150176200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:150169400-150178400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr3:150169400-150178800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr3:150169600-150176200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:150169600-150176200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:150169800-150175800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:150169800-150176400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr3:150170200-150176200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:150170200-150176200	Weak transcription	Ovary	ovary
43	chr3:150171800-150176200	Weak transcription	Brain Anterior Caudate	brain
44	chr3:150172000-150184800	Weak transcription	Brain Substantia Nigra	brain
45	chr3:150172200-150176000	Weak transcription	HUVEC	blood vessel
46	chr3:150172200-150176200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:150172200-150179800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:150172400-150175800	Weak transcription	NHLF	lung
49	chr3:150172400-150176000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr3:150172400-150176000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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